Gemini for Science Status

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🧬 Available Science Skills

Below is a categorized list of all science skills now available in your workspace. You can trigger them at any time by asking relevant questions or providing data files.

🧬 Genomics & Genetics

• alphagenome-single-variant-analysis: Analyze variant effects on gene expression, chromatin accessibility, transcription factors (AlphaGenome API).
• dbsnp-database: Resolve rsIDs, genomic coordinates, and HGVS variant definitions.
• gnomad-database: Look up allele frequency and loss-of-function constraint metrics (pLI, LOEUF) in gnomAD.
• clinvar-database: Access variant clinical significance, pathogenicity classifications, and evidence.
• gtex-database: Retrieve tissue-specific RNA-seq expression and eQTL associations across 54 tissues.
• ensembl-database: Map gene/transcript/protein IDs and retrieve sequence or variant consequence predictions (VEP).
• ucsc-conservation-and-tfbs: Fetch conservation scores (phyloP/phastCons) and ENCODE/JASPAR binding sites.

🧪 Proteins & Structural Biology

• alphafold-database-fetch-and-analyze: Retrieve and analyze AlphaFold predicted 3D structures and pLDDT scores using UniProt IDs.
• pdb-database: Search or download experimentally determined 3D structures from the Protein Data Bank (PDB).
• foldseek-structural-search: Perform structural similarity searches against PDB/AlphaFold databases using a .pdb or .cif coordinate file.
• protein-sequence-msa: Run Multiple Sequence Alignment (MSA) using EBI Clustal Omega.
• protein-sequence-similarity-search: Find protein homologues using MMseqs2 or BLAST.
• uniprot-database: Access functional annotations, taxonomy, and protein sequences from UniProtKB.
• human-protein-atlas-database: Fetch protein expression profiles and spatial cellular localizations from the HPA.
• interpro-database: Scan protein sequences for domains, families, and functional sites.
• pymol: Visualize, render, superimpose, and analyze 3D structures using PyMOL.

💊 Cheminformatics, Pathways & Clinical Trials

• chembl-database: Query bioactive compounds, targets, assays, and structures (IC50, Ki).
• pubchem-database: Look up chemical structures, physical properties, and safety annotations using names, CIDs, or SMILES.
• opentargets-database: Retrieve target-disease associations and drug tractability evidence.
• reactome-database: Perform pathway enrichment analysis and export reaction diagrams.
• string-database: Map protein-protein interaction networks and physical binding partners.
• clinical-trials-database: Query clinical trials on ClinicalTrials.gov by drug, condition, or NCT ID.
• openfda-database: Query FDA adverse events, product labeling, recalls, and approvals.

📚 Literature Search & Text Restoration

• pubmed-database / literature-search-europepmc: Search biomedical publications, retrieve abstracts, and link papers to database identifiers.
• literature-search-openalex / literature-search-arxiv / literature-search-biorxiv: Search general academic literature and preprints.
• predictingthepast: Restore, date, and attribute ancient Greek and Latin texts using deep learning (Aeneas/Ithaca).